The 9/11 Commission report released in 2004 proclaimed a number of Pakistan’s religious schools or madrassas served as “incubators for violent extremism” ( CR, 2004 ). The flaws in institutional capacity of madrassa’s have granted enough space for militants to exploit Islamic educational institutes by grabbing the minds of students. Basically, it is not the curriculum of madrassa-’s which has anything immoral in it because it consists of the teaching of the Holy Quran and Hadith but it is the context of Madrassa’s include which is spreading a certain kind of ideology among the students, a major contributing factor towards militancy and extremism in Pakistan especially in FATA.